TY - GEN
T1 - Modular semantic tagging of medline abstracts and its use in inferring regulatory networks
AU - Verhagen, Marc
AU - Pustejovsky, James
AU - Taylor, Ronald
AU - Sanfilippo, Antonio
PY - 2011
Y1 - 2011
N2 - We describe MedstractPlus, a resource for mining relations from the Medline bibliographic database that is currently under construction. It was built on the remains of Medstract, a previously created resource that included a biorelation server and an acronym database. MedstractPlus uses simple and scalable natural language processing modules to structure text, is designed with reusability and extendibility in mind, and adheres to the philosophy of the Linguistic Annotation Framework. We show how MedstractPlus has been used to provide seeds for a novel approach to inferring transcriptional regulatory networks from gene expression data.
AB - We describe MedstractPlus, a resource for mining relations from the Medline bibliographic database that is currently under construction. It was built on the remains of Medstract, a previously created resource that included a biorelation server and an acronym database. MedstractPlus uses simple and scalable natural language processing modules to structure text, is designed with reusability and extendibility in mind, and adheres to the philosophy of the Linguistic Annotation Framework. We show how MedstractPlus has been used to provide seeds for a novel approach to inferring transcriptional regulatory networks from gene expression data.
UR - https://www.scopus.com/pages/publications/81255205452
U2 - 10.1109/ICSC.2011.78
DO - 10.1109/ICSC.2011.78
M3 - Conference contribution
AN - SCOPUS:81255205452
SN - 9780769544922
T3 - Proceedings - 5th IEEE International Conference on Semantic Computing, ICSC 2011
SP - 498
EP - 505
BT - Proceedings - 5th IEEE International Conference on Semantic Computing, ICSC 2011
T2 - 5th Annual IEEE International Conference on Semantic Computing, ICSC 2011
Y2 - 18 September 2011 through 21 September 2011
ER -