GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory

Sachin Wasnik; Paul Donachy; Terence Harmer; Ron Perrott; P. V. Jithesh; Mark McCurley; Jim Johnston; Michael Townsley; Shane Mckee

doi:10.1109/CBMS.2006.90

GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory

Sachin Wasnik^*, Paul Donachy, Terence Harmer, Ron Perrott, P. V. Jithesh, Mark McCurley, Jim Johnston, Michael Townsley, Shane Mckee

^*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Citation (Scopus)

Abstract

One of the challenges for the grid community is to develop services to support both shared computation and shared information. As a part of this development, it is necessary to convert laboratories to pervasive computing environments (smart laboratories) where data generated in the laboratories can be captured and published automatically; where information generated can be combined and compound with other laboratories' data on demand, In this paper, we describe one such initiative to capture and consume the data generated by the nucleotide sequencer in the grid enabled automated analysis system called GeneGrid developed at the Belfast e-Science Centre.

Original language	English
Title of host publication	Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006
Pages	768-773
Number of pages	6
DOIs	https://doi.org/10.1109/CBMS.2006.90
Publication status	Published - 2006
Externally published	Yes
Event	19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006 - Salt Lake City, UT, United States Duration: 22 Jun 2006 → 23 Jun 2006

Publication series

Name	Proceedings - IEEE Symposium on Computer-Based Medical Systems
Volume	2006
ISSN (Print)	1063-7125

Conference

Conference	19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006
Country/Territory	United States
City	Salt Lake City, UT
Period	22/06/06 → 23/06/06

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10.1109/CBMS.2006.90

Cite this

Wasnik, S., Donachy, P., Harmer, T., Perrott, R., Jithesh, P. V., McCurley, M., Johnston, J., Townsley, M., & Mckee, S. (2006). GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory. In Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006 (pp. 768-773). Article 1647664 (Proceedings - IEEE Symposium on Computer-Based Medical Systems; Vol. 2006). https://doi.org/10.1109/CBMS.2006.90

@inproceedings{42575d43e4484b26b8ce52669e8e46f5,

title = "GeneGrid: From {"}virtual{"} bioinformatics laboratory to {"}Smart{"} bioinformatics laboratory",

abstract = "One of the challenges for the grid community is to develop services to support both shared computation and shared information. As a part of this development, it is necessary to convert laboratories to pervasive computing environments (smart laboratories) where data generated in the laboratories can be captured and published automatically; where information generated can be combined and compound with other laboratories' data on demand, In this paper, we describe one such initiative to capture and consume the data generated by the nucleotide sequencer in the grid enabled automated analysis system called GeneGrid developed at the Belfast e-Science Centre.",

author = "Sachin Wasnik and Paul Donachy and Terence Harmer and Ron Perrott and Jithesh, \{P. V.\} and Mark McCurley and Jim Johnston and Michael Townsley and Shane Mckee",

year = "2006",

doi = "10.1109/CBMS.2006.90",

language = "English",

isbn = "0769525172",

series = "Proceedings - IEEE Symposium on Computer-Based Medical Systems",

pages = "768--773",

booktitle = "Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006",

note = "19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006 ; Conference date: 22-06-2006 Through 23-06-2006",

}

Wasnik, S, Donachy, P, Harmer, T, Perrott, R, Jithesh, PV, McCurley, M, Johnston, J, Townsley, M & Mckee, S 2006, GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory. in Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006., 1647664, Proceedings - IEEE Symposium on Computer-Based Medical Systems, vol. 2006, pp. 768-773, 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006, Salt Lake City, UT, United States, 22/06/06. https://doi.org/10.1109/CBMS.2006.90

GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory. / Wasnik, Sachin; Donachy, Paul; Harmer, Terence et al.
Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006. 2006. p. 768-773 1647664 (Proceedings - IEEE Symposium on Computer-Based Medical Systems; Vol. 2006).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - GeneGrid

T2 - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006

AU - Wasnik, Sachin

AU - Donachy, Paul

AU - Harmer, Terence

AU - Perrott, Ron

AU - Jithesh, P. V.

AU - McCurley, Mark

AU - Johnston, Jim

AU - Townsley, Michael

AU - Mckee, Shane

PY - 2006

Y1 - 2006

N2 - One of the challenges for the grid community is to develop services to support both shared computation and shared information. As a part of this development, it is necessary to convert laboratories to pervasive computing environments (smart laboratories) where data generated in the laboratories can be captured and published automatically; where information generated can be combined and compound with other laboratories' data on demand, In this paper, we describe one such initiative to capture and consume the data generated by the nucleotide sequencer in the grid enabled automated analysis system called GeneGrid developed at the Belfast e-Science Centre.

AB - One of the challenges for the grid community is to develop services to support both shared computation and shared information. As a part of this development, it is necessary to convert laboratories to pervasive computing environments (smart laboratories) where data generated in the laboratories can be captured and published automatically; where information generated can be combined and compound with other laboratories' data on demand, In this paper, we describe one such initiative to capture and consume the data generated by the nucleotide sequencer in the grid enabled automated analysis system called GeneGrid developed at the Belfast e-Science Centre.

UR - https://www.scopus.com/pages/publications/33845566321

U2 - 10.1109/CBMS.2006.90

DO - 10.1109/CBMS.2006.90

M3 - Conference contribution

AN - SCOPUS:33845566321

SN - 0769525172

SN - 9780769525174

T3 - Proceedings - IEEE Symposium on Computer-Based Medical Systems

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BT - Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006

Y2 - 22 June 2006 through 23 June 2006

ER -

Wasnik S, Donachy P, Harmer T, Perrott R, Jithesh PV, McCurley M et al. GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory. In Proceedings - 19th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2006. 2006. p. 768-773. 1647664. (Proceedings - IEEE Symposium on Computer-Based Medical Systems). doi: 10.1109/CBMS.2006.90

GeneGrid: From "virtual" bioinformatics laboratory to "Smart" bioinformatics laboratory

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