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Biallelic PI4KA Mutations Disrupt B-Cell Metabolism and Cause B-Cell Lymphopenia and Hypogammaglobulinemia

  • Francesco Saettini*
  • , Fabiola Guerra
  • , Mario Mauri
  • , Claire G. Salter
  • , Margaret P. Adam
  • , David Adams
  • , Emma L. Baple
  • , Estibaliz Barredo
  • , Sanil Bhatia
  • , Arndt Borkhardt
  • , Alfredo Brusco
  • , Cristina Bugarin
  • , Clizia Chinello
  • , Andrew H. Crosby
  • , Precilla D’Souza
  • , Vanna Denti
  • , Grazia Fazio
  • , Silvia Giuliani
  • , Hye Sun Kuehn
  • , Hassan Amel
  • Asha Elmi, Bernice Lo, Federica Malighetti, Giorgia Mandrile, Andrea Martín-Nalda, Heather C. Mefford, Daniele Moratto, Fatemeh Emam Mousavi, Zoe Nelson, Luis González Gutiérrez-Solana, Ellen Macnamara, Vincent Michaud, Melanie O’Leary, Lisa Pagani, Lisa Pavinato, Patricia VVelez Santamaria, Laura Planas-Serra, Manuel Quadri, Miquel Raspall-Chaure, Stefano Rebellato, Sergio D. Rosenzweig, Agathe Roubertie, Dirk Holzinger, Christin Deal, Catherine Walsh Vockley, Angela Maria Savino, Jennifer L.Stoddard, Holm H. Uhlig, Aurora Pujol, Fulvio Magni, Giuseppe Paglia, Gianni Cazzaniga, Rocco Piazza, Matteo Barberis, Andrea Biondi
*Corresponding author for this work
  • Azienda Ospedaliera San Gerardo Monza
  • University of Milan - Bicocca
  • University of Surrey
  • University of Exeter
  • University Hospital Southampton NHS Foundation Trust
  • University of Washington
  • National Institutes of Health
  • Royal Devon & Exeter NHS Foundation Trust
  • Hospital General Universitario Gregorio Marañon
  • Heinrich Heine University Düsseldorf
  • University of Turin
  • Azienda Ospedaliera - Universitaria Città della Salute e della Scienza di Torino
  • Sidra Medicine
  • HBKU College of Health and Life Sciences
  • Vall d'Hebron Research Institute
  • Brescia Civil Hospital
  • Seattle Children's Hospital
  • Hospital Infantil Universitario Nino Jesus de Madrid
  • University Hospital of Bordeaux
  • Broad Institute
  • Bellvitge Biomedical Research Institute
  • Centro de Investigación en Red de Enfermedades Raras (CIBERER)
  • University Hospital Vall d'Hebron
  • Institut des neurosciences de Montpellier
  • University of Duisburg-Essen
  • University of Applied Sciences Bochum
  • University of Pittsburgh
  • University of Oxford
  • National Institute for Health Research (NIHR) Oxford Biomedical Research Centre
  • ICREA

Research output: Contribution to journalArticlepeer-review

Abstract

Purpose PI4KA-related disorder is a highly clinically variable condition characterized by neurological (limb spasticity, developmental delay, intellectual disability, seizures, ataxia, nystagmus) and gastrointestinal (inflammatory bowel disease and multiple intestinal atresia) manifestations. Although features consistent with immunodeficiency (autoimmunity/autoinflammation and recurrent infections) have been reported in a subset of patients, the burden of B-cell deficiency and hypogammaglobulinemia has not been extensively investigated. We sought to describe the clinical presentation and manifestations of patients with PI4KA-related disorder and to investigate the metabolic consequences of biallelic PI4KA variants in B cells. Methods Clinical data from patients with PI4KA variants were obtained. Multi-omics analyses combining transcriptome, proteome, lipidome and metabolome analyses in conjunction with functional assays were performed in EBV-transformed B cells. Results Clinical and laboratory data of 13 patients were collected. Recurrent infections (7/13), autoimmune/autoinflammatory manifestations (5/13), B-cell deficiency (8/13) and hypogammaglobulinemia (8/13) were frequently observed. Patients' B cells frequently showed increased transitional and decreased switched memory B-cell subsets. Pathway analyses based on differentially expressed transcripts and proteins confirmed the central role of PI4KA in B cell differentiation with altered B-cell receptor (BCR) complex and signalling. By altering lipids production and tricarboxylic acid cycle regulation, and causing increased endoplasmic reticulum stress, biallelic PI4KA mutations disrupt B cell metabolism inducing mitochondrial dysfunction. As a result, B cells show hyperactive PI3K/mTOR pathway, increased autophagy and deranged cytoskeleton organization. Conclusion By altering lipid metabolism and TCA cycle, impairing mitochondrial activity, hyperactivating mTOR pathway and increasing autophagy, PI4KA-related disorder causes a syndromic inborn error of immunity presenting with B-cell deficiency and hypogammaglobulinemia.
Original languageEnglish
Article number15
Number of pages20
JournalJournal of Clinical Immunology
Volume45
Issue number1
DOIs
Publication statusPublished - 23 Sept 2024

Keywords

  • Hypogammaglobulinemia
  • Inborn error of immunity
  • Pi4ka
  • Syndromic immunodeficiency

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